Health Informatics & Image Analysis Research Group

Department of Computer Science & Engineering
Indian Institute of Technology Kharagpur, West Bengal, India

BIOINTMED:Integrated Biomedical Knowledge Base with Ontologies and Clinical Trials




Biomedical knowledge has a high impact on mankind and society. The work aims to integrate biomedical data from various heterogeneous sources like dictionaries or corpus and amalgamate them into an uniform accessible format for the end user like biologist, pharmacist, and data scientist. The proposed integrated biomedical knowledge base, BIOINTMED, have 11299, 12981, 4428, 61491, 48663, and 13146 unique entities for drugs, diseases, targets, genes, biomedical pathways, and adverse events, respectively. The uniform aggregated collection is also explored to study the interaction among these entity pairs.

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BIOINTMEDData.zip

GitHub repository

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For any queries, please contact:
  • Ankita Saha
    Department of Advance Technology and Development Centre
    Indian Institute of Technology Kharagpur
    Email: ankitasaha AT iitkgp DOT ac DOT in
  • Jayanta Mukhopadhyay
    Department of Computer Science and Engineering
    Indian Institute of Technology Kharagpur
    Email: jay AT cse DOT iitkgp DOT ac DOT in
  • Sudeshna Sarkar
    Department of Computer Science and Engineering
    Indian Institute of Technology Kharagpur
    Email: sudeshna AT cse DOT iitkgp DOT ac DOT in